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Публикации за 2010
Novel inhibitors of glyceraldehyde-3-phosphate dehydrogenase: covalent modification of NAD-binding site by aromatic thiols. Chernorizov, K. A.; Elkina, J. L.; Semenyuk, P. I.; Svedas, V. K.; Muronetz, V. I. Biochemistry (Mosc). 2010 Dec;75(12):1444-9. PubMed
Recombinant human sperm-specific glyceraldehyde-3-phosphate dehydrogenase: structural basis for enhanced stability. Elkina, Y. L.; Kuravsky, M. L.; El'darov, M. A.; Stogov, S. V.; Muronetz, V. I.; Schmalhausen, E. V. Biochim Biophys Acta. 2010 Dec;1804(12):2207-12. Epub 2010 Sep 15. PubMed; doi 10.1016/j.bbapap.2010.09.002
Minimal Zn(2+) binding site of amyloid-beta. Tsvetkov, P. O.; Kulikova, A. A.; Golovin, A. V.; Tkachev, Y. V.; Archakov, A. I.; Kozin, S. A.; Makarov, A. A. Biophys J. 2010 Nov 17;99(10):L84-6. PubMed; doi 10.1016/j.bpj.2010.09.015
Sir2-dependent daughter-to-mother transport of the damaged proteins in yeast is required to prevent high stress sensitivity of the daughters. Knorre, D. A.; Kulemzina, I. A.; Sorokin, M. I.; Kochmak, S. A.; Bocharova, N. A.; Sokolov, S. S.; Severin, F. F. Cell Cycle. 2010 Nov 15;9(22):4501-5. PubMed
The quasi-equilibrium assumption for Bi-Bi ordered bisubstrate enzymatic reaction. How to discriminate the mechanism correctly. Vrzheshch, P. V. Biochemistry (Mosc). 2010 Nov;75(11):1374-82. PubMed
Inhibition of cyclooxygenase activity of prostaglandin-H-synthase by excess substrate (molecular oxygen). Trushkin, N. A.; Filimonov, I. S.; Vrzheshch, P. V. Biochemistry (Mosc). 2010 Nov;75(11):1368-73. PubMed
Aberrant demethylation of the recoverin gene is involved in the aberrant expression of recoverin in cancer cells. Bazhin, A. V.; De, S. m. e. t.; Golovastova, M. O.; Schmidt, J.; Philippov, P. P. Exp Dermatol. 2010 Nov;19(11):1023-5. doi: 10.1111/j.1600-0625.2010.01126.x. Epub PubMed; doi 10.1111/j.1600-0625.2010.01126.x
Restriction-modification systems and bacteriophage invasion: who wins? Enikeeva, F. N.; Severinov, K. V.; Gelfand, M. S. J Theor Biol. 2010 Oct 21;266(4):550-9. Epub 2010 Jul 13. PubMed; doi 10.1016/j.jtbi.2010.07.006
Asymmetric and non-uniform evolution of recently duplicated human genes. Panchin, A. Y.; Gelfand, M. S.; Ramensky, V. E.; Artamonova, I. I. Biol Direct. 2010 Sep 8;5:54. PubMed; doi 10.1186/1745-6150-5-54
[Secondary structure of SsoII-like (cytosine-5)-DNA methyltransferases N-terminal region determined by circular dichroism spectroscopy]. Riazanova, A. I. u.; Molochkov, N. V.; Abrosimova, L. A.; Alekseevskii, A. V.; Kariagina, A. S.; Protsenko, A. S.; Friedhoff, P.; Oretskaia, T. S.; Kubareva, E. A. Mol Biol (Mosk). 2010 Sep-Oct;44(5):911-21. PubMed
Comparison of models of thrombin-binding 15-mer DNA aptamer by molecular dynamics simulation. Reshetnikov, R. V.; Golovin, A. V.; Kopylov, A. M. Biochemistry (Mosc). 2010 Aug;75(8):1017-24. PubMed
An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies. Mazin, P. V.; Gelfand, M. S.; Mironov, A. A.; Rakhmaninova, A. B.; Rubinov, A. R.; Russell, R. B.; Kalinina, O. V. Algorithms Mol Biol. 2010 Jul 15;5:29. PubMed; doi 10.1186/1748-7188-5-29
Water replacement hypothesis in atomic details: effect of trehalose on the structure of single dehydrated POPC bilayers. Golovina, E. A.; Golovin, A.; Hoekstra, F. A.; Faller, R. Langmuir. 2010 Jul 6;26(13):11118-26. PubMed; doi 10.1021/la100891x
Mapping the ribosomal protein S7 regulatory binding site on mRNA of the E. coli streptomycin operon. Surdina, A. V.; Rassokhin, T. I.; Golovin, A. V.; Spiridonova, V. A.; Kopylov, A. M. Biochemistry (Mosc). 2010 Jul;75(7):841-50. PubMed
[Trans-translation: facts and hypothesis]. Shpanchenko, O. V.; Bugaeva, E. I. u.; Golovin, A. V.; Dontsova, O. A. Mol Biol (Mosk). 2010 Jul-Aug;44(4):563-72. PubMed
RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach. Novichkov, P. S.; Rodionov, D. A.; Stavrovskaya, E. D.; Novichkova, E. S.; Kazakov, A. E.; Gelfand, M. S.; Arkin, A. P.; Mironov, A. A.; Dubchak, I. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W299-307. Epub 2010 Jun 11. PubMed; doi 10.1093/nar/gkq531
Characterization of the N-ATPase, a distinct, laterally transferred Na+-translocating form of the bacterial F-type membrane ATPase. Dibrova, D. V.; Galperin, M. Y.; Mulkidjanian, A. Y. Bioinformatics. 2010 Jun 15;26(12):1473-6. Epub 2010 May 13. PubMed; doi 10.1093/bioinformatics/btq234
Hexokinase inhibits flux of fluorescently labeled ATP through mitochondrial outer membrane porin. Perevoshchikova, I. V.; Zorov, S. D.; Kotova, E. A.; Zorov, D. B.; Antonenko, Y. N. FEBS Lett. 2010 Jun 3;584(11):2397-402. Epub 2010 Apr 22. PubMed; doi 10.1016/j.febslet.2010.04.033
Prevention of cardiolipin oxidation and fatty acid cycling as two antioxidant mechanisms of cationic derivatives of plastoquinone (SkQs). Skulachev, V. P.; Antonenko, Y. N.; Cherepanov, D. A.; Chernyak, B. V.; Izyumov, D. S.; Khailova, L. S.; Klishin, S. S.; Korshunova, G. A.; Lyamzaev, K. G.; Pletjushkina, O. Y.; Roginsky, V. A.; Rokitskaya, T. I.; Severin, F. F.; Severina, I. I.; Simonyan, R. A.; Skulachev, M. V.; Sumbatyan, N. V.; Sukhanova, E. I.; Tashlitsky, V. N.; Trendeleva, T. A.; Vyssokikh, M. Y.; Zvyagilskaya, R. A. Biochim Biophys Acta. 2010 Jun-Jul;1797(6-7):878-89. Epub 2010 Mar 20. PubMed; doi 10.1016/j.bbabio.2010.03.015
Effect of 2-hydroxypropyl-beta-cyclodextrin on thermal inactivation, denaturation and aggregation of glyceraldehyde-3-phosphate dehydrogenase from rabbit skeletal muscle. Maloletkina, O. I.; Markossian, K. A.; Asryants, R. A.; Semenyuk, P. I.; Makeeva, V. F.; Kurganov, B. I. Int J Biol Macromol. 2010 Jun;46(5):487-92. Epub 2010 Mar 23. PubMed; doi 10.1016/j.ijbiomac.2010.03.008
Exclusive sequences of different genomes. Mitrofanov, S. I.; Panchin, A. Y.; Spirin, S. A.; Alexeevski, A. V.; Panchin, Y. V. J Bioinform Comput Biol. 2010 Jun;8(3):519-34. PubMed
Malakite: an automatic tool for characterisation of structure of reliable blocks in multiple alignments of protein sequences. Burkov, B.; Nagaev, B.; Spirin, S.; Alexeevski, A. J Bioinform Comput Biol. 2010 Jun;8(3):503-17. PubMed
Interaction of antibodies with aromatic ligands: the role of pi-stacking. Arzhanik, V.; Svistunova, D.; Koliasnikov, O.; Egorov, A. M. J Bioinform Comput Biol. 2010 Jun;8(3):471-83. PubMed
Stepwise mechanism for transcription fidelity. Yuzenkova, Y.; Bochkareva, A.; Tadigotla, V. R.; Roghanian, M.; Zorov, S.; Severinov, K.; Zenkin, N. BMC Biol. 2010 May 7;8:54. PubMed; doi 10.1186/1741-7007-8-54
Electron transfer between exogenous electron donors and reaction center of photosystem 2. Mamedov, M. D.; Kurashov, V. N.; Petrova, I. O.; Zaspa, A. A.; Semenov, A. Y. Biochemistry (Mosc). 2010 May;75(5):579-84. PubMed
Thermal stability and aggregation of creatine kinase from rabbit skeletal muscle. Effect of 2-hydroxypropyl-beta-cyclodextrin. Maloletkina, O. I.; Markossian, K. A.; Belousova, L. V.; Kleimenov, S. Y.; Orlov, V. N.; Makeeva, V. F.; Kurganov, B. I. Biophys Chem. 2010 May;148(1-3):121-30. Epub 2010 Mar 16. PubMed; doi 10.1016/j.bpc.2010.03.005
Evolutionary dynamics of clustered irregularly interspaced short palindromic repeat systems in the ocean metagenome. Sorokin, V. A.; Gelfand, M. S.; Artamonova, I. I. Appl Environ Microbiol. 2010 Apr;76(7):2136-44. Epub 2010 Jan 29. PubMed; doi 10.1128/AEM.01985-09
Structural changes of a protein bound to a polyelectrolyte depend on the hydrophobicity and polymerization degree of the polyelectrolyte. Stogov, S. V.; Izumrudov, V. A.; Muronetz, V. I. Biochemistry (Mosc). 2010 Apr;75(4):437-42. PubMed
Guidelines for reporting of biocatalytic reactions. Gardossi, L.; Poulsen, P. B.; Ballesteros, A.; Hult, K.; Svedas, V. K.; Vasic-Racki, D.; Carrea, G.; Magnusson, A.; Schmid, A.; Wohlgemuth, R.; Halling, P. J. Trends Biotechnol. 2010 Apr;28(4):171-80. Epub 2010 Feb 10. PubMed; doi 10.1016/j.tibtech.2010.01.001
Microtubules govern stress granule mobility and dynamics. Nadezhdina, E. S.; Lomakin, A. J.; Shpilman, A. A.; Chudinova, E. M.; Ivanov, P. A. Biochim Biophys Acta. 2010 Mar;1803(3):361-71. Epub 2009 Dec 28. PubMed; doi 10.1016/j.bbamcr.2009.12.004
New-generation Skulachev ions exhibiting nephroprotective and neuroprotective properties. Plotnikov, E. Y.; Silachev, D. N.; Chupyrkina, A. A.; Danshina, M. I.; Jankauskas, S. S.; Morosanova, M. A.; Stelmashook, E. V.; Vasileva, A. K.; Goryacheva, E. S.; Pirogov, Y. A.; Isaev, N. K.; Zorov, D. B. Biochemistry (Mosc). 2010 Feb;75(2):145-50. PubMed
Trypsin-like proteins of the fungi as possible markers of pathogenicity. Dubovenko, A. G.; Dunaevsky, Y. E.; Belozersky, M. A.; Oppert, B.; Lord, J. C.; Elpidina, E. N. Fungal Biol. 2010 Feb-Mar;114(2-3):151-9. PubMed
Structural aspects of trans-translation. Shpanchenko, O. V.; Golovin, A. V.; Bugaeva, E. Y.; Isaksson, L. A.; Dontsova, O. A. IUBMB Life. 2010 Feb;62(2):120-4. PubMed; doi 10.1002/iub.296
Dynamics of nonmembranous cell components: role of active transport along microtubules. Lomakin, A. Y.; Nadezhdina, E. S. Biochemistry (Mosc). 2010 Jan;75(1):7-18. PubMed
Large-scale identification and analysis of C-proteins. Sorokin, V.; Severinov, K.; Gelfand, M. S. Methods Mol Biol. 2010;674:269-82. PubMed; doi 10.1007/978-1-60761-854-6_17
PLANdbAffy: probe-level annotation database for Affymetrix expression microarrays. Nurtdinov, R. N.; Vasiliev, M. O.; Ershova, A. S.; Lossev, I. S.; Karyagina, A. S. Nucleic Acids Res. 2010 Jan;38(Database issue):D726-30. Epub 2009 Nov 11. PubMed; doi 10.1093/nar/gkp969
RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes. Novichkov, P. S.; Laikova, O. N.; Novichkova, E. S.; Gelfand, M. S.; Arkin, A. P.; Dubchak, I.; Rodionov, D. A. Nucleic Acids Res. 2010 Jan;38(Database issue):D111-8. Epub 2009 Nov 1. PubMed; doi 10.1093/nar/gkp894
Comparative analysis of the effects of alpha-crystallin and GroEL on the kinetics of thermal aggregation of rabbit muscle glyceraldehyde-3-phosphate dehydrogenase. Markossian, K. A.; Golub, N. V.; Chebotareva, N. A.; Asryants, R. A.; Naletova, I. N.; Muronetz, V. I.; Muranov, K. O.; Kurganov, B. I. Protein J. 2010 Jan;29(1):11-25. PubMed; doi 10.1007/s10930-009-9217-9
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