Публикации за 2010

Novel inhibitors of glyceraldehyde-3-phosphate dehydrogenase: covalent modification of NAD-binding site by aromatic thiols.
Chernorizov, K. A.; Elkina, J. L.; Semenyuk, P. I.; Svedas, V. K.; Muronetz, V. I.
Biochemistry (Mosc). 2010 Dec;75(12):1444-9.
PubMed

Recombinant human sperm-specific glyceraldehyde-3-phosphate dehydrogenase: structural basis for enhanced stability.
Elkina, Y. L.; Kuravsky, M. L.; El'darov, M. A.; Stogov, S. V.; Muronetz, V. I.; Schmalhausen, E. V.
Biochim Biophys Acta. 2010 Dec;1804(12):2207-12. Epub 2010 Sep 15.
PubMed; doi 10.1016/j.bbapap.2010.09.002

Minimal Zn(2+) binding site of amyloid-beta.
Tsvetkov, P. O.; Kulikova, A. A.; Golovin, A. V.; Tkachev, Y. V.; Archakov, A. I.; Kozin, S. A.; Makarov, A. A.
Biophys J. 2010 Nov 17;99(10):L84-6.
PubMed; doi 10.1016/j.bpj.2010.09.015

Sir2-dependent daughter-to-mother transport of the damaged proteins in yeast is required to prevent high stress sensitivity of the daughters.
Knorre, D. A.; Kulemzina, I. A.; Sorokin, M. I.; Kochmak, S. A.; Bocharova, N. A.; Sokolov, S. S.; Severin, F. F.
Cell Cycle. 2010 Nov 15;9(22):4501-5.
PubMed

The quasi-equilibrium assumption for Bi-Bi ordered bisubstrate enzymatic reaction. How to discriminate the mechanism correctly.
Vrzheshch, P. V.
Biochemistry (Mosc). 2010 Nov;75(11):1374-82.
PubMed

Inhibition of cyclooxygenase activity of prostaglandin-H-synthase by excess substrate (molecular oxygen).
Trushkin, N. A.; Filimonov, I. S.; Vrzheshch, P. V.
Biochemistry (Mosc). 2010 Nov;75(11):1368-73.
PubMed

Aberrant demethylation of the recoverin gene is involved in the aberrant expression of recoverin in cancer cells.
Bazhin, A. V.; De, S. m. e. t.; Golovastova, M. O.; Schmidt, J.; Philippov, P. P.
Exp Dermatol. 2010 Nov;19(11):1023-5. doi: 10.1111/j.1600-0625.2010.01126.x. Epub
PubMed; doi 10.1111/j.1600-0625.2010.01126.x

Restriction-modification systems and bacteriophage invasion: who wins?
Enikeeva, F. N.; Severinov, K. V.; Gelfand, M. S.
J Theor Biol. 2010 Oct 21;266(4):550-9. Epub 2010 Jul 13.
PubMed; doi 10.1016/j.jtbi.2010.07.006

Asymmetric and non-uniform evolution of recently duplicated human genes.
Panchin, A. Y.; Gelfand, M. S.; Ramensky, V. E.; Artamonova, I. I.
Biol Direct. 2010 Sep 8;5:54.
PubMed; doi 10.1186/1745-6150-5-54

[Secondary structure of SsoII-like (cytosine-5)-DNA methyltransferases N-terminal region determined by circular dichroism spectroscopy].
Riazanova, A. I. u.; Molochkov, N. V.; Abrosimova, L. A.; Alekseevskii, A. V.; Kariagina, A. S.; Protsenko, A. S.; Friedhoff, P.; Oretskaia, T. S.; Kubareva, E. A.
Mol Biol (Mosk). 2010 Sep-Oct;44(5):911-21.
PubMed

Comparison of models of thrombin-binding 15-mer DNA aptamer by molecular dynamics simulation.
Reshetnikov, R. V.; Golovin, A. V.; Kopylov, A. M.
Biochemistry (Mosc). 2010 Aug;75(8):1017-24.
PubMed

An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies.
Mazin, P. V.; Gelfand, M. S.; Mironov, A. A.; Rakhmaninova, A. B.; Rubinov, A. R.; Russell, R. B.; Kalinina, O. V.
Algorithms Mol Biol. 2010 Jul 15;5:29.
PubMed; doi 10.1186/1748-7188-5-29

Water replacement hypothesis in atomic details: effect of trehalose on the structure of single dehydrated POPC bilayers.
Golovina, E. A.; Golovin, A.; Hoekstra, F. A.; Faller, R.
Langmuir. 2010 Jul 6;26(13):11118-26.
PubMed; doi 10.1021/la100891x

Mapping the ribosomal protein S7 regulatory binding site on mRNA of the E. coli streptomycin operon.
Surdina, A. V.; Rassokhin, T. I.; Golovin, A. V.; Spiridonova, V. A.; Kopylov, A. M.
Biochemistry (Mosc). 2010 Jul;75(7):841-50.
PubMed

[Trans-translation: facts and hypothesis].
Shpanchenko, O. V.; Bugaeva, E. I. u.; Golovin, A. V.; Dontsova, O. A.
Mol Biol (Mosk). 2010 Jul-Aug;44(4):563-72.
PubMed

RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach.
Novichkov, P. S.; Rodionov, D. A.; Stavrovskaya, E. D.; Novichkova, E. S.; Kazakov, A. E.; Gelfand, M. S.; Arkin, A. P.; Mironov, A. A.; Dubchak, I.
Nucleic Acids Res. 2010 Jul;38(Web Server issue):W299-307. Epub 2010 Jun 11.
PubMed; doi 10.1093/nar/gkq531

Characterization of the N-ATPase, a distinct, laterally transferred Na+-translocating form of the bacterial F-type membrane ATPase.
Dibrova, D. V.; Galperin, M. Y.; Mulkidjanian, A. Y.
Bioinformatics. 2010 Jun 15;26(12):1473-6. Epub 2010 May 13.
PubMed; doi 10.1093/bioinformatics/btq234

Hexokinase inhibits flux of fluorescently labeled ATP through mitochondrial outer membrane porin.
Perevoshchikova, I. V.; Zorov, S. D.; Kotova, E. A.; Zorov, D. B.; Antonenko, Y. N.
FEBS Lett. 2010 Jun 3;584(11):2397-402. Epub 2010 Apr 22.
PubMed; doi 10.1016/j.febslet.2010.04.033

Prevention of cardiolipin oxidation and fatty acid cycling as two antioxidant mechanisms of cationic derivatives of plastoquinone (SkQs).
Skulachev, V. P.; Antonenko, Y. N.; Cherepanov, D. A.; Chernyak, B. V.; Izyumov, D. S.; Khailova, L. S.; Klishin, S. S.; Korshunova, G. A.; Lyamzaev, K. G.; Pletjushkina, O. Y.; Roginsky, V. A.; Rokitskaya, T. I.; Severin, F. F.; Severina, I. I.; Simonyan, R. A.; Skulachev, M. V.; Sumbatyan, N. V.; Sukhanova, E. I.; Tashlitsky, V. N.; Trendeleva, T. A.; Vyssokikh, M. Y.; Zvyagilskaya, R. A.
Biochim Biophys Acta. 2010 Jun-Jul;1797(6-7):878-89. Epub 2010 Mar 20.
PubMed; doi 10.1016/j.bbabio.2010.03.015

Effect of 2-hydroxypropyl-beta-cyclodextrin on thermal inactivation, denaturation and aggregation of glyceraldehyde-3-phosphate dehydrogenase from rabbit skeletal muscle.
Maloletkina, O. I.; Markossian, K. A.; Asryants, R. A.; Semenyuk, P. I.; Makeeva, V. F.; Kurganov, B. I.
Int J Biol Macromol. 2010 Jun;46(5):487-92. Epub 2010 Mar 23.
PubMed; doi 10.1016/j.ijbiomac.2010.03.008

Exclusive sequences of different genomes.
Mitrofanov, S. I.; Panchin, A. Y.; Spirin, S. A.; Alexeevski, A. V.; Panchin, Y. V.
J Bioinform Comput Biol. 2010 Jun;8(3):519-34.
PubMed

Malakite: an automatic tool for characterisation of structure of reliable blocks in multiple alignments of protein sequences.
Burkov, B.; Nagaev, B.; Spirin, S.; Alexeevski, A.
J Bioinform Comput Biol. 2010 Jun;8(3):503-17.
PubMed

Interaction of antibodies with aromatic ligands: the role of pi-stacking.
Arzhanik, V.; Svistunova, D.; Koliasnikov, O.; Egorov, A. M.
J Bioinform Comput Biol. 2010 Jun;8(3):471-83.
PubMed

Stepwise mechanism for transcription fidelity.
Yuzenkova, Y.; Bochkareva, A.; Tadigotla, V. R.; Roghanian, M.; Zorov, S.; Severinov, K.; Zenkin, N.
BMC Biol. 2010 May 7;8:54.
PubMed; doi 10.1186/1741-7007-8-54

Electron transfer between exogenous electron donors and reaction center of photosystem 2.
Mamedov, M. D.; Kurashov, V. N.; Petrova, I. O.; Zaspa, A. A.; Semenov, A. Y.
Biochemistry (Mosc). 2010 May;75(5):579-84.
PubMed

Thermal stability and aggregation of creatine kinase from rabbit skeletal muscle. Effect of 2-hydroxypropyl-beta-cyclodextrin.
Maloletkina, O. I.; Markossian, K. A.; Belousova, L. V.; Kleimenov, S. Y.; Orlov, V. N.; Makeeva, V. F.; Kurganov, B. I.
Biophys Chem. 2010 May;148(1-3):121-30. Epub 2010 Mar 16.
PubMed; doi 10.1016/j.bpc.2010.03.005

Evolutionary dynamics of clustered irregularly interspaced short palindromic repeat systems in the ocean metagenome.
Sorokin, V. A.; Gelfand, M. S.; Artamonova, I. I.
Appl Environ Microbiol. 2010 Apr;76(7):2136-44. Epub 2010 Jan 29.
PubMed; doi 10.1128/AEM.01985-09

Structural changes of a protein bound to a polyelectrolyte depend on the hydrophobicity and polymerization degree of the polyelectrolyte.
Stogov, S. V.; Izumrudov, V. A.; Muronetz, V. I.
Biochemistry (Mosc). 2010 Apr;75(4):437-42.
PubMed

Guidelines for reporting of biocatalytic reactions.
Gardossi, L.; Poulsen, P. B.; Ballesteros, A.; Hult, K.; Svedas, V. K.; Vasic-Racki, D.; Carrea, G.; Magnusson, A.; Schmid, A.; Wohlgemuth, R.; Halling, P. J.
Trends Biotechnol. 2010 Apr;28(4):171-80. Epub 2010 Feb 10.
PubMed; doi 10.1016/j.tibtech.2010.01.001

Microtubules govern stress granule mobility and dynamics.
Nadezhdina, E. S.; Lomakin, A. J.; Shpilman, A. A.; Chudinova, E. M.; Ivanov, P. A.
Biochim Biophys Acta. 2010 Mar;1803(3):361-71. Epub 2009 Dec 28.
PubMed; doi 10.1016/j.bbamcr.2009.12.004

New-generation Skulachev ions exhibiting nephroprotective and neuroprotective properties.
Plotnikov, E. Y.; Silachev, D. N.; Chupyrkina, A. A.; Danshina, M. I.; Jankauskas, S. S.; Morosanova, M. A.; Stelmashook, E. V.; Vasileva, A. K.; Goryacheva, E. S.; Pirogov, Y. A.; Isaev, N. K.; Zorov, D. B.
Biochemistry (Mosc). 2010 Feb;75(2):145-50.
PubMed

Trypsin-like proteins of the fungi as possible markers of pathogenicity.
Dubovenko, A. G.; Dunaevsky, Y. E.; Belozersky, M. A.; Oppert, B.; Lord, J. C.; Elpidina, E. N.
Fungal Biol. 2010 Feb-Mar;114(2-3):151-9.
PubMed

Structural aspects of trans-translation.
Shpanchenko, O. V.; Golovin, A. V.; Bugaeva, E. Y.; Isaksson, L. A.; Dontsova, O. A.
IUBMB Life. 2010 Feb;62(2):120-4.
PubMed; doi 10.1002/iub.296

Dynamics of nonmembranous cell components: role of active transport along microtubules.
Lomakin, A. Y.; Nadezhdina, E. S.
Biochemistry (Mosc). 2010 Jan;75(1):7-18.
PubMed

Large-scale identification and analysis of C-proteins.
Sorokin, V.; Severinov, K.; Gelfand, M. S.
Methods Mol Biol. 2010;674:269-82.
PubMed; doi 10.1007/978-1-60761-854-6_17

PLANdbAffy: probe-level annotation database for Affymetrix expression microarrays.
Nurtdinov, R. N.; Vasiliev, M. O.; Ershova, A. S.; Lossev, I. S.; Karyagina, A. S.
Nucleic Acids Res. 2010 Jan;38(Database issue):D726-30. Epub 2009 Nov 11.
PubMed; doi 10.1093/nar/gkp969

RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes.
Novichkov, P. S.; Laikova, O. N.; Novichkova, E. S.; Gelfand, M. S.; Arkin, A. P.; Dubchak, I.; Rodionov, D. A.
Nucleic Acids Res. 2010 Jan;38(Database issue):D111-8. Epub 2009 Nov 1.
PubMed; doi 10.1093/nar/gkp894

Comparative analysis of the effects of alpha-crystallin and GroEL on the kinetics of thermal aggregation of rabbit muscle glyceraldehyde-3-phosphate dehydrogenase.
Markossian, K. A.; Golub, N. V.; Chebotareva, N. A.; Asryants, R. A.; Naletova, I. N.; Muronetz, V. I.; Muranov, K. O.; Kurganov, B. I.
Protein J. 2010 Jan;29(1):11-25.
PubMed; doi 10.1007/s10930-009-9217-9

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