Публикации за 2009

New data on biochemical mechanism of programmed senescence of organisms and antioxidant defense of mitochondria.
Skulachev, V. P.
Biochemistry (Mosc). 2009 Dec;74(12):1400-3.
PubMed

Electrostatic binding of substituted metal phthalocyanines to enterobacterial cells: its role in photodynamic inactivation.
Strakhovskaya, M. G.; Antonenko, Y. N.; Pashkovskaya, A. A.; Kotova, E. A.; Kireev, V.; Zhukhovitsky, V. G.; Kuznetsova, N. A.; Yuzhakova, O. A.; Negrimovsky, V. M.; Rubin, A. B.
Biochemistry (Mosc). 2009 Dec;74(12):1305-14.
PubMed

Comparative genomics of ethanolamine utilization.
Tsoy, O.; Ravcheev, D.; Mushegian, A.
J Bacteriol. 2009 Dec;191(23):7157-64. Epub 2009 Sep 25.
PubMed; doi 10.1128/JB.00838-09

Structural features of the tmRNA-ribosome interaction.
Bugaeva, E. Y.; Surkov, S.; Golovin, A. V.; Ofverstedt, L. G.; Skoglund, U.; Isaksson, L. A.; Bogdanov, A. A.; Shpanchenko, O. V.; Dontsova, O. A.
RNA. 2009 Dec;15(12):2312-20. Epub 2009 Oct 27.
PubMed; doi 10.1261/rna.1584209

Genotype analysis identifies the cause of the "royal disease".
Rogaev, E. I.; Grigorenko, A. P.; Faskhutdinova, G.; Kittler, E. L.; Moliaka, Y. K.
Science. 2009 Nov 6;326(5954):817. Epub 2009 Oct 8.
PubMed; doi 10.1126/science.1180660

Developing novel approaches to improve binding energy estimation and virtual screening: a PARP case study.
Novikov, F. N.; Stroylov, V. S.; Stroganov, O. V.; Kulkov, V.; Chilov, G. G.
J Mol Model. 2009 Nov;15(11):1337-47. Epub 2009 Apr 16.
PubMed; doi 10.1007/s00894-009-0497-y

[Co-metabolic activity of aphid Acyrthosiphon pisum and symbiotic bacterium Buchnera aphidicola STR. APS].
Rakitin, D. I.; Gel'fand, M. S.
Mol Biol (Mosk). 2009 Nov-Dec;43(6):1093-5.
PubMed

[Evolutionary history of the SSX family of human C/T-antigens].
Shustrova, E. N.; Artamonova, I. I.
Mol Biol (Mosk). 2009 Nov-Dec;43(6):1025-31.
PubMed

Effect of transitory glucose deprivation on mitochondrial structure and functions in cultured cerebellar granule neurons.
Stelmashook, E. V.; Isaev, N. K.; Plotnikov, E. Y.; Uzbekov, R. E.; Alieva, I. B.; Arbeille, B.; Zorov, D. B.
Neurosci Lett. 2009 Sep 18;461(2):140-4. Epub 2009 Jun 7.
PubMed; doi 10.1016/j.neulet.2009.05.073

[New derivatives of azobenzene for the directed modification of proteins].
Khien, l. e.; Shirling, B.; Riazanova, A. I. u.; Zatsepin, T. S.; Volkov, E. M.; Kubareva, E. A.; Velichko, T. I.; Pingoud, A.; Oretskaia, T. S.
Bioorg Khim. 2009 Sep-Oct;35(5):610-7.
PubMed

CLIP-170-dependent capture of membrane organelles by microtubules initiates minus-end directed transport.
Lomakin, A. J.; Semenova, I.; Zaliapin, I.; Kraikivski, P.; Nadezhdina, E.; Slepchenko, B. M.; Akhmanova, A.; Rodionov, V.
Dev Cell. 2009 Sep;17(3):323-33.
PubMed; doi 10.1016/j.devcel.2009.07.010

[On the phylogenetic position of Hexapoda within the Pancrustacea].
Aleshin, V. V.; Mikhailov, K. V.; Konstantinova, A. V.; Nikitin, M. A.; Rusin, L. I. u.; Buinova, D. A.; Kedrova, O. S.; Petrov, N. B.
Mol Biol (Mosk). 2009 Sep-Oct;43(5):866-81.
PubMed

SNAD: Sequence Name Annotation-based Designer.
Sidorov, I. A.; Reshetov, D. A.; Gorbalenya, A. E.
BMC Bioinformatics. 2009 Aug 14;10:251.
PubMed; doi 10.1186/1471-2105-10-251

Modulation of alternative splicing by long-range RNA structures in Drosophila.
Raker, V. A.; Mironov, A. A.; Gelfand, M. S.; Pervouchine, D. D.
Nucleic Acids Res. 2009 Aug;37(14):4533-44. Epub 2009 May 22.
PubMed; doi 10.1093/nar/gkp407

Water replacement hypothesis in atomic detail--factors determining the structure of dehydrated bilayer stacks.
Golovina, E. A.; Golovin, A. V.; Hoekstra, F. A.; Faller, R.
Biophys J. 2009 Jul 22;97(2):490-9.
PubMed; doi 10.1016/j.bpj.2009.05.007

Structure and function of an ADP-ribose-dependent transcriptional regulator of NAD metabolism.
Huang, N.; De, I. n. g. e. n. i. i. s.; Galeazzi, L.; Mancini, C.; Korostelev, Y. D.; Rakhmaninova, A. B.; Gelfand, M. S.; Rodionov, D. A.; Raffaelli, N.; Zhang, H.
Structure. 2009 Jul 15;17(7):939-51.
PubMed; doi 10.1016/j.str.2009.05.012

Cooperative binding of substrates to transketolase from Saccharomyces cerevisiae.
Sevostyanova, I. A.; Selivanov, V. A.; Yurshev, V. A.; Solovjeva, O. N.; Zabrodskaya, S. V.; Kochetov, G. A.
Biochemistry (Mosc). 2009 Jul;74(7):789-92.
PubMed

The origin of Metazoa: a transition from temporal to spatial cell differentiation.
Mikhailov, K. V.; Konstantinova, A. V.; Nikitin, M. A.; Troshin, P. V.; Rusin, L. Y.; Lyubetsky, V. A.; Panchin, Y. V.; Mylnikov, A. P.; Moroz, L. L.; Kumar, S.; Aleoshin, V. V.
Bioessays. 2009 Jul;31(7):758-68.
PubMed; doi 10.1002/bies.200800214

[Preparation and characterization of mouse embryonic fibroblasts with K72W mutation in somatic cytochrome C gene].
Mufazalov, I. A.; Pen'kov, D. N.; Cherniak, B. V.; Pletiushkina, O. I. u.; Vysokikh, M. I. u.; Kirpichnikov, M. P.; Dolgikh, D. A.; Kruglov, A. A.; Kuprash, D. V.; Skulachev, V. P.; Nedospasov, S. A.
Mol Biol (Mosk). 2009 Jul-Aug;43(4):648-56.
PubMed

Rodent-specific alternative exons are more frequent in rapidly evolving genes and in paralogs.
Nurtdinov, R. N.; Mironov, A. A.; Gelfand, M. S.
BMC Evol Biol. 2009 Jun 26;9:142.
PubMed; doi 10.1186/1471-2148-9-142

Safranine O as a fluorescent probe for mitochondrial membrane potential studied on the single particle level and in suspension.
Perevoshchikova, I. V.; Sorochkina, A. I.; Zorov, D. B.; Antonenko, Y. N.
Biochemistry (Mosc). 2009 Jun;74(6):663-71.
PubMed

Inhibition of zymosan-induced kidney dysfunction by tyrphostin AG-490.
Dimitrova, P.; Gyurkovska, V.; Shalova, I.; Saso, L.; Ivanovska, N.
J Inflamm (Lond). 2009 May 5;6:13.
PubMed; doi 10.1186/1476-9255-6-13

An attempt to prevent senescence: a mitochondrial approach.
Skulachev, V. P.; Anisimov, V. N.; Antonenko, Y. N.; Bakeeva, L. E.; Chernyak, B. V.; Erichev, V. P.; Filenko, O. F.; Kalinina, N. I.; Kapelko, V. I.; Kolosova, N. G.; Kopnin, B. P.; Korshunova, G. A.; Lichinitser, M. R.; Obukhova, L. A.; Pasyukova, E. G.; Pisarenko, O. I.; Roginsky, V. A.; Ruuge, E. K.; Senin, I. I.; Severina, I. I.; Skulachev, M. V.; Spivak, I. M.; Tashlitsky, V. N.; Tkachuk, V. A.; Vyssokikh, M. Y.; Yaguzhinsky, L. S.; Zorov, D. B.
Biochim Biophys Acta. 2009 May;1787(5):437-61. Epub 2008 Dec 29.
PubMed; doi 10.1016/j.bbabio.2008.12.008

Engineering transcription factors with novel DNA-binding specificity using comparative genomics.
Desai, T. A.; Rodionov, D. A.; Gelfand, M. S.; Alm, E. J.; Rao, C. V.
Nucleic Acids Res. 2009 May;37(8):2493-503. Epub 2009 Mar 5.
PubMed; doi 10.1093/nar/gkp079

Features of mitochondrial energetics in living unicellular eukaryote Tetrahymena pyriformis. A model for study of mammalian intracellular adaptation.
Prikhodko, E. A.; Brailovskaya, I. V.; Korotkov, S. M.; Mokhova, E. N.
Biochemistry (Mosc). 2009 Apr;74(4):371-6.
PubMed

Genomic identification in the historical case of the Nicholas II royal family.
Rogaev, E. I.; Grigorenko, A. P.; Moliaka, Y. K.; Faskhutdinova, G.; Goltsov, A.; Lahti, A.; Hildebrandt, C.; Kittler, E. L.; Morozova, I.
Proc Natl Acad Sci U S A. 2009 Mar 31;106(13):5258-63. Epub 2009 Feb 27.
PubMed; doi 10.1073/pnas.0811190106

Comparative genomic analyses of nickel, cobalt and vitamin B12 utilization.
Zhang, Y.; Rodionov, D. A.; Gelfand, M. S.; Gladyshev, V. N.
BMC Genomics. 2009 Feb 10;10:78.
PubMed; doi 10.1186/1471-2164-10-78

Protein aggregation and neurodegeneration: clues from a yeast model of Huntington's disease.
Bocharova, N.; Chave-Cox, R.; Sokolov, S.; Knorre, D.; Severin, F.
Biochemistry (Mosc). 2009 Feb;74(2):231-4.
PubMed

Systematic prediction of control proteins and their DNA binding sites.
Sorokin, V.; Severinov, K.; Gelfand, M. S.
Nucleic Acids Res. 2009 Feb;37(2):441-51. Epub 2008 Dec 4.
PubMed; doi 10.1093/nar/gkn931

Isolation of the influenza A HA2 C-terminal segment by combination of nonionic detergents.
Smirnova, Y. A.; Fedorova, N. V.; Ksenofontov, A. L.; Kordyukova, L. V.; Serebryakova, M. V.; Baratova, L. A.; Vaskovsky, B. V.
Adv Exp Med Biol. 2009;611:311-2.
PubMed

A novel class of modular transporters for vitamins in prokaryotes.
Rodionov, D. A.; Hebbeln, P.; Eudes, A.; ter, B. e. e. k.; Rodionova, I. A.; Erkens, G. B.; Slotboom, D. J.; Gelfand, M. S.; Osterman, A. L.; Hanson, A. D.; Eitinger, T.
J Bacteriol. 2009 Jan;191(1):42-51. Epub 2008 Oct 17.
PubMed; doi 10.1128/JB.01208-08

Comparative genomics of regulation of fatty acid and branched-chain amino acid utilization in proteobacteria.
Kazakov, A. E.; Rodionov, D. A.; Alm, E.; Arkin, A. P.; Dubchak, I.; Gelfand, M. S.
J Bacteriol. 2009 Jan;191(1):52-64. Epub 2008 Sep 26.
PubMed; doi 10.1128/JB.01175-08

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