Публикации за 2009
New data on biochemical mechanism of programmed senescence of organisms and antioxidant defense of mitochondria. Skulachev, V. P.Biochemistry (Mosc). 2009 Dec;74(12):1400-3. PubMed
Electrostatic binding of substituted metal phthalocyanines to enterobacterial cells: its role in photodynamic inactivation. Strakhovskaya, M. G.; Antonenko, Y. N.; Pashkovskaya, A. A.; Kotova, E. A.; Kireev, V.; Zhukhovitsky, V. G.; Kuznetsova, N. A.; Yuzhakova, O. A.; Negrimovsky, V. M.; Rubin, A. B.Biochemistry (Mosc). 2009 Dec;74(12):1305-14. PubMed
Comparative genomics of ethanolamine utilization. Tsoy, O.; Ravcheev, D.; Mushegian, A.J Bacteriol. 2009 Dec;191(23):7157-64. Epub 2009 Sep 25. PubMed ; doi 10.1128/JB.00838-09
Structural features of the tmRNA-ribosome interaction. Bugaeva, E. Y.; Surkov, S.; Golovin, A. V.; Ofverstedt, L. G.; Skoglund, U.; Isaksson, L. A.; Bogdanov, A. A.; Shpanchenko, O. V.; Dontsova, O. A.RNA. 2009 Dec;15(12):2312-20. Epub 2009 Oct 27. PubMed ; doi 10.1261/rna.1584209
Genotype analysis identifies the cause of the "royal disease". Rogaev, E. I.; Grigorenko, A. P.; Faskhutdinova, G.; Kittler, E. L.; Moliaka, Y. K.Science. 2009 Nov 6;326(5954):817. Epub 2009 Oct 8. PubMed ; doi 10.1126/science.1180660
Developing novel approaches to improve binding energy estimation and virtual screening: a PARP case study. Novikov, F. N.; Stroylov, V. S.; Stroganov, O. V.; Kulkov, V.; Chilov, G. G.J Mol Model. 2009 Nov;15(11):1337-47. Epub 2009 Apr 16. PubMed ; doi 10.1007/s00894-009-0497-y
[Co-metabolic activity of aphid Acyrthosiphon pisum and symbiotic bacterium Buchnera aphidicola STR. APS]. Rakitin, D. I.; Gel'fand, M. S.Mol Biol (Mosk). 2009 Nov-Dec;43(6):1093-5. PubMed
[Evolutionary history of the SSX family of human C/T-antigens]. Shustrova, E. N.; Artamonova, I. I.Mol Biol (Mosk). 2009 Nov-Dec;43(6):1025-31. PubMed
Effect of transitory glucose deprivation on mitochondrial structure and functions in cultured cerebellar granule neurons. Stelmashook, E. V.; Isaev, N. K.; Plotnikov, E. Y.; Uzbekov, R. E.; Alieva, I. B.; Arbeille, B.; Zorov, D. B.Neurosci Lett. 2009 Sep 18;461(2):140-4. Epub 2009 Jun 7. PubMed ; doi 10.1016/j.neulet.2009.05.073
[New derivatives of azobenzene for the directed modification of proteins]. Khien, l. e.; Shirling, B.; Riazanova, A. I. u.; Zatsepin, T. S.; Volkov, E. M.; Kubareva, E. A.; Velichko, T. I.; Pingoud, A.; Oretskaia, T. S.Bioorg Khim. 2009 Sep-Oct;35(5):610-7. PubMed
CLIP-170-dependent capture of membrane organelles by microtubules initiates minus-end directed transport. Lomakin, A. J.; Semenova, I.; Zaliapin, I.; Kraikivski, P.; Nadezhdina, E.; Slepchenko, B. M.; Akhmanova, A.; Rodionov, V.Dev Cell. 2009 Sep;17(3):323-33. PubMed ; doi 10.1016/j.devcel.2009.07.010
[On the phylogenetic position of Hexapoda within the Pancrustacea]. Aleshin, V. V.; Mikhailov, K. V.; Konstantinova, A. V.; Nikitin, M. A.; Rusin, L. I. u.; Buinova, D. A.; Kedrova, O. S.; Petrov, N. B.Mol Biol (Mosk). 2009 Sep-Oct;43(5):866-81. PubMed
SNAD: Sequence Name Annotation-based Designer. Sidorov, I. A.; Reshetov, D. A.; Gorbalenya, A. E.BMC Bioinformatics. 2009 Aug 14;10:251. PubMed ; doi 10.1186/1471-2105-10-251
Modulation of alternative splicing by long-range RNA structures in Drosophila. Raker, V. A.; Mironov, A. A.; Gelfand, M. S.; Pervouchine, D. D.Nucleic Acids Res. 2009 Aug;37(14):4533-44. Epub 2009 May 22. PubMed ; doi 10.1093/nar/gkp407
Water replacement hypothesis in atomic detail--factors determining the structure of dehydrated bilayer stacks. Golovina, E. A.; Golovin, A. V.; Hoekstra, F. A.; Faller, R.Biophys J. 2009 Jul 22;97(2):490-9. PubMed ; doi 10.1016/j.bpj.2009.05.007
Structure and function of an ADP-ribose-dependent transcriptional regulator of NAD metabolism. Huang, N.; De, I. n. g. e. n. i. i. s.; Galeazzi, L.; Mancini, C.; Korostelev, Y. D.; Rakhmaninova, A. B.; Gelfand, M. S.; Rodionov, D. A.; Raffaelli, N.; Zhang, H.Structure. 2009 Jul 15;17(7):939-51. PubMed ; doi 10.1016/j.str.2009.05.012
Cooperative binding of substrates to transketolase from Saccharomyces cerevisiae. Sevostyanova, I. A.; Selivanov, V. A.; Yurshev, V. A.; Solovjeva, O. N.; Zabrodskaya, S. V.; Kochetov, G. A.Biochemistry (Mosc). 2009 Jul;74(7):789-92. PubMed
The origin of Metazoa: a transition from temporal to spatial cell differentiation. Mikhailov, K. V.; Konstantinova, A. V.; Nikitin, M. A.; Troshin, P. V.; Rusin, L. Y.; Lyubetsky, V. A.; Panchin, Y. V.; Mylnikov, A. P.; Moroz, L. L.; Kumar, S.; Aleoshin, V. V.Bioessays. 2009 Jul;31(7):758-68. PubMed ; doi 10.1002/bies.200800214
[Preparation and characterization of mouse embryonic fibroblasts with K72W mutation in somatic cytochrome C gene]. Mufazalov, I. A.; Pen'kov, D. N.; Cherniak, B. V.; Pletiushkina, O. I. u.; Vysokikh, M. I. u.; Kirpichnikov, M. P.; Dolgikh, D. A.; Kruglov, A. A.; Kuprash, D. V.; Skulachev, V. P.; Nedospasov, S. A.Mol Biol (Mosk). 2009 Jul-Aug;43(4):648-56. PubMed
Rodent-specific alternative exons are more frequent in rapidly evolving genes and in paralogs. Nurtdinov, R. N.; Mironov, A. A.; Gelfand, M. S.BMC Evol Biol. 2009 Jun 26;9:142. PubMed ; doi 10.1186/1471-2148-9-142
Safranine O as a fluorescent probe for mitochondrial membrane potential studied on the single particle level and in suspension. Perevoshchikova, I. V.; Sorochkina, A. I.; Zorov, D. B.; Antonenko, Y. N.Biochemistry (Mosc). 2009 Jun;74(6):663-71. PubMed
Inhibition of zymosan-induced kidney dysfunction by tyrphostin AG-490. Dimitrova, P.; Gyurkovska, V.; Shalova, I.; Saso, L.; Ivanovska, N.J Inflamm (Lond). 2009 May 5;6:13. PubMed ; doi 10.1186/1476-9255-6-13
An attempt to prevent senescence: a mitochondrial approach. Skulachev, V. P.; Anisimov, V. N.; Antonenko, Y. N.; Bakeeva, L. E.; Chernyak, B. V.; Erichev, V. P.; Filenko, O. F.; Kalinina, N. I.; Kapelko, V. I.; Kolosova, N. G.; Kopnin, B. P.; Korshunova, G. A.; Lichinitser, M. R.; Obukhova, L. A.; Pasyukova, E. G.; Pisarenko, O. I.; Roginsky, V. A.; Ruuge, E. K.; Senin, I. I.; Severina, I. I.; Skulachev, M. V.; Spivak, I. M.; Tashlitsky, V. N.; Tkachuk, V. A.; Vyssokikh, M. Y.; Yaguzhinsky, L. S.; Zorov, D. B.Biochim Biophys Acta. 2009 May;1787(5):437-61. Epub 2008 Dec 29. PubMed ; doi 10.1016/j.bbabio.2008.12.008
Engineering transcription factors with novel DNA-binding specificity using comparative genomics. Desai, T. A.; Rodionov, D. A.; Gelfand, M. S.; Alm, E. J.; Rao, C. V.Nucleic Acids Res. 2009 May;37(8):2493-503. Epub 2009 Mar 5. PubMed ; doi 10.1093/nar/gkp079
Features of mitochondrial energetics in living unicellular eukaryote Tetrahymena pyriformis. A model for study of mammalian intracellular adaptation. Prikhodko, E. A.; Brailovskaya, I. V.; Korotkov, S. M.; Mokhova, E. N.Biochemistry (Mosc). 2009 Apr;74(4):371-6. PubMed
Genomic identification in the historical case of the Nicholas II royal family. Rogaev, E. I.; Grigorenko, A. P.; Moliaka, Y. K.; Faskhutdinova, G.; Goltsov, A.; Lahti, A.; Hildebrandt, C.; Kittler, E. L.; Morozova, I.Proc Natl Acad Sci U S A. 2009 Mar 31;106(13):5258-63. Epub 2009 Feb 27. PubMed ; doi 10.1073/pnas.0811190106
Comparative genomic analyses of nickel, cobalt and vitamin B12 utilization. Zhang, Y.; Rodionov, D. A.; Gelfand, M. S.; Gladyshev, V. N.BMC Genomics. 2009 Feb 10;10:78. PubMed ; doi 10.1186/1471-2164-10-78
Protein aggregation and neurodegeneration: clues from a yeast model of Huntington's disease. Bocharova, N.; Chave-Cox, R.; Sokolov, S.; Knorre, D.; Severin, F.Biochemistry (Mosc). 2009 Feb;74(2):231-4. PubMed
Systematic prediction of control proteins and their DNA binding sites. Sorokin, V.; Severinov, K.; Gelfand, M. S.Nucleic Acids Res. 2009 Feb;37(2):441-51. Epub 2008 Dec 4. PubMed ; doi 10.1093/nar/gkn931
Isolation of the influenza A HA2 C-terminal segment by combination of nonionic detergents. Smirnova, Y. A.; Fedorova, N. V.; Ksenofontov, A. L.; Kordyukova, L. V.; Serebryakova, M. V.; Baratova, L. A.; Vaskovsky, B. V.Adv Exp Med Biol. 2009;611:311-2. PubMed
A novel class of modular transporters for vitamins in prokaryotes. Rodionov, D. A.; Hebbeln, P.; Eudes, A.; ter, B. e. e. k.; Rodionova, I. A.; Erkens, G. B.; Slotboom, D. J.; Gelfand, M. S.; Osterman, A. L.; Hanson, A. D.; Eitinger, T.J Bacteriol. 2009 Jan;191(1):42-51. Epub 2008 Oct 17. PubMed ; doi 10.1128/JB.01208-08
Comparative genomics of regulation of fatty acid and branched-chain amino acid utilization in proteobacteria. Kazakov, A. E.; Rodionov, D. A.; Alm, E.; Arkin, A. P.; Dubchak, I.; Gelfand, M. S.J Bacteriol. 2009 Jan;191(1):52-64. Epub 2008 Sep 26. PubMed ; doi 10.1128/JB.01175-08
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