Публикации за 2007
Conserved and species-specific alternative splicing in mammalian genomes. Nurtdinov, R. N.; Neverov, A. D.; Favorov, A. V.; Mironov, A. A.; Gelfand, M. S.BMC Evol Biol. 2007 Dec 22;7:249. PubMed ; doi 10.1186/1471-2148-7-249
Chiral high-performance liquid chromatography analysis of alpha-amino acid mixtures using a novel SH reagent--N-R-mandelyl-L-cysteine and traditional enantiomeric thiols for precolumn derivatization. Chernobrovkin, M. G.; Shapovalova, E. N.; Guranda, D. T.; Kudryavtsev, P. A.; Svedas, V. K.; Shpigun, O. A.J Chromatogr A. 2007 Dec 14;1175(1):89-95. Epub 2007 Oct 18. PubMed ; doi 10.1016/j.chroma.2007.10.034
A biochemical approach to the problem of aging: "megaproject" on membrane-penetrating ions. The first results and prospects. Skulachev, V. P.Biochemistry (Mosc). 2007 Dec;72(12):1385-96. PubMed
Phylogeny of flowering plants by the chloroplast genome sequences: in search of a "lucky gene". Logacheva, M. D.; Penin, A. A.; Samigullin, T. H.; Vallejo-Roman, C. M.; Antonov, A. S.Biochemistry (Mosc). 2007 Dec;72(12):1324-30. PubMed
Transcriptional regulation of the methionine and cysteine transport and metabolism in streptococci. Kovaleva, G. Y.; Gelfand, M. S.FEMS Microbiol Lett. 2007 Nov;276(2):207-15. PubMed ; doi 10.1111/j.1574-6968.2007.00934.x
Abundance and functional diversity of riboswitches in microbial communities. Kazanov, M. D.; Vitreschak, A. G.; Gelfand, M. S.BMC Genomics. 2007 Oct 1;8:347. PubMed ; doi 10.1186/1471-2164-8-347
Antioxidant and prooxidant effects of quercetin on glyceraldehyde-3-phosphate dehydrogenase. Schmalhausen, E. V.; Zhlobek, E. B.; Shalova, I. N.; Firuzi, O.; Saso, L.; Muronetz, V. I.Food Chem Toxicol. 2007 Oct;45(10):1988-93. Epub 2007 May 3. PubMed ; doi 10.1016/j.fct.2007.04.015
Overlapping alternative donor splice sites in the human genome. Ermakova, E. O.; Nurtdinov, R. N.; Gelfand, M. S.J Bioinform Comput Biol. 2007 Oct;5(5):991-1004. PubMed
Deinococcus geothermalis: the pool of extreme radiation resistance genes shrinks. Makarova, K. S.; Omelchenko, M. V.; Gaidamakova, E. K.; Matrosova, V. Y.; Vasilenko, A.; Zhai, M.; Lapidus, A.; Copeland, A.; Kim, E.; Land, M.; Mavrommatis, K.; Pitluck, S.; Richardson, P. M.; Detter, C.; Brettin, T.; Saunders, E.; Lai, B.; Ravel, B.; Kemner, K. M.; Wolf, Y. I.; Sorokin, A.; Gerasimova, A. V.; Gelfand, M. S.; Fredrickson, J. K.; Koonin, E. V.; Daly, M. J.PLoS One. 2007 Sep 26;2(9):e955. PubMed ; doi 10.1371/journal.pone.0000955
Molecular oxygen (a substrate of the cyclooxygenase reaction) in the kinetic mechanism of the bifunctional enzyme prostaglandin-H-synthase. Filimonov, I. S.; Vrzheshch, P. V.Biochemistry (Mosc). 2007 Sep;72(9):944-53. PubMed
Steady-state kinetics of bifunctional enzymes. Taking into account kinetic hierarchy of fast and slow catalytic cycles in a generalized model. Vrzheshch, P. V.Biochemistry (Mosc). 2007 Sep;72(9):936-43. PubMed
Effects of lipophilic dications on planar bilayer phospholipid membrane and mitochondria. Severina, I. I.; Vyssokikh, M. Y.; Pustovidko, A. V.; Simonyan, R. A.; Rokitskaya, T. I.; Skulachev, V. P.Biochim Biophys Acta. 2007 Sep;1767(9):1164-8. Epub 2007 Jun 12. PubMed ; doi 10.1016/j.bbabio.2007.05.010
Low-molecular-weight post-translationally modified microcins. Severinov, K.; Semenova, E.; Kazakov, A.; Kazakov, T.; Gelfand, M. S.Mol Microbiol. 2007 Sep;65(6):1380-94. Epub 2007 Aug 17. PubMed ; doi 10.1111/j.1365-2958.2007.05874.x
Kinetic models of cyclooxygenase and peroxidase inactivation of prostaglandin-H-synthase during catalysis. Vrzheshch, P. V.; Tsaplina, L. A.; Sakharova, I. S.Biochemistry (Mosc). 2007 Aug;72(8):828-34. PubMed
Comparative genomics and evolution of alternative splicing: the pessimists' science. Artamonova, I. I.; Gelfand, M. S.Chem Rev. 2007 Aug;107(8):3407-30. Epub 2007 Jul 24. PubMed ; doi 10.1021/cr068304c
A model of evolution with constant selective pressure for regulatory DNA sites. Enikeeva, F. N.; Kotelnikova, E. A.; Gelfand, M. S.; Makeev, V. J.BMC Evol Biol. 2007 Jul 27;7:125. PubMed ; doi 10.1186/1471-2148-7-125
Interaction of polyelectrolytes with proteins, 3. Influence of complexing polycations on the thermoaggregation of oligomeric enzymes. Shalova, I. N.; Naletova, I. N.; Saso, L.; Muronetz, V. I.; Izumrudov, V. A.Macromol Biosci. 2007 Jul 9;7(7):929-39. PubMed ; doi 10.1002/mabi.200700052
Conversion and compensatory evolution of the gamma-crystallin genes and identification of a cataractogenic mutation that reverses the sequence of the human CRYGD gene to an ancestral state. Plotnikova, O. V.; Kondrashov, F. A.; Vlasov, P. K.; Grigorenko, A. P.; Ginter, E. K.; Rogaev, E. I.Am J Hum Genet. 2007 Jul;81(1):32-43. Epub 2007 May 16. PubMed ; doi 10.1086/518616
Somatic and sperm-specific isoenzymes of glyceraldehyde-3-phosphate dehydrogenase: comparative analysis of primary structures and functional features. Kuravsky, M. L.; Muronetz, V. I.Biochemistry (Mosc). 2007 Jul;72(7):744-9. PubMed
[A method for prediction of conserved RNA secondary structures]. Mironov, A. A.Mol Biol (Mosk). 2007 Jul-Aug;41(4):711-8. PubMed
Cyclooxygenase and peroxidase inactivation of prostaglandin-H-synthase during catalysis. Tsaplina, L. A.; Vrzheshch, P. V.Biochemistry (Mosc). 2007 Jun;72(6):631-9. PubMed
Living without Fur: the subtlety and complexity of iron-responsive gene regulation in the symbiotic bacterium Rhizobium and other alpha-proteobacteria. Johnston, A. W.; Todd, J. D.; Curson, A. R.; Lei, S.; Nikolaidou-Katsaridou, N.; Gelfand, M. S.; Rodionov, D. A.Biometals. 2007 Jun;20(3-4):501-11. Epub 2007 Feb 20. PubMed ; doi 10.1007/s10534-007-9085-8
MicroRNA in schizophrenia: genetic and expression analysis of miR-130b (22q11). Burmistrova, O. A.; Goltsov, A. Y.; Abramova, L. I.; Kaleda, V. G.; Orlova, V. A.; Rogaev, E. I.Biochemistry (Mosc). 2007 May;72(5):578-82. PubMed
Quantum chemical studies of the catalytic mechanism of N-terminal nucleophile hydrolase. Chilov, G. G.; Sidorova, A. V.; Svedas, V. K.Biochemistry (Mosc). 2007 May;72(5):495-500. PubMed
Decrease of dehydrogenase activity of cerebral glyceraldehyde-3-phosphate dehydrogenase in different animal models of Alzheimer's disease. Shalova, I. N.; Cechalova, K.; Rehakova, Z.; Dimitrova, P.; Ognibene, E.; Caprioli, A.; Schmalhausen, E. V.; Muronetz, V. I.; Saso, L.Biochim Biophys Acta. 2007 May;1770(5):826-32. Epub 2007 Feb 4. PubMed ; doi 10.1016/j.bbagen.2007.01.014
Enzyme-catalyzed side reactions with molecular oxygen may contribute to cell signaling and neurodegenerative diseases. Bunik, V. I.; Schloss, J. V.; Pinto, J. T.; Gibson, G. E.; Cooper, A. J.Neurochem Res. 2007 Apr-May;32(4-5):871-91. Epub 2007 Mar 7. PubMed ; doi 10.1007/s11064-006-9239-z
Methyltransferase that modifies guanine 966 of the 16 S rRNA: functional identification and tertiary structure. Lesnyak, D. V.; Osipiuk, J.; Skarina, T.; Sergiev, P. V.; Bogdanov, A. A.; Edwards, A.; Savchenko, A.; Joachimiak, A.; Dontsova, O. A.J Biol Chem. 2007 Feb 23;282(8):5880-7. Epub 2006 Dec 21. PubMed ; doi 10.1074/jbc.M608214200
Comparative genomic analysis of regulation of anaerobic respiration in ten genomes from three families of gamma-proteobacteria (Enterobacteriaceae, Pasteurellaceae, Vibrionaceae). Ravcheev, D. A.; Gerasimova, A. V.; Mironov, A. A.; Gelfand, M. S.BMC Genomics. 2007 Feb 21;8:54. PubMed ; doi 10.1186/1471-2164-8-54
Temporal regulation of viral transcription during development of Thermus thermophilus bacteriophage phiYS40. Sevostyanova, A.; Djordjevic, M.; Kuznedelov, K.; Naryshkina, T.; Gelfand, M. S.; Severinov, K.; Minakhin, L.J Mol Biol. 2007 Feb 16;366(2):420-35. Epub 2006 Nov 18. PubMed ; doi 10.1016/j.jmb.2006.11.050
Purifying selection in mitochondria, free-living and obligate intracellular proteobacteria. Mamirova, L.; Popadin, K.; Gelfand, M. S.BMC Evol Biol. 2007 Feb 12;7:17. PubMed ; doi 10.1186/1471-2148-7-17
Effect of alpha-crystallin on thermal denaturation and aggregation of rabbit muscle glyceraldehyde-3-phosphate dehydrogenase. Khanova, H. A.; Markossian, K. A.; Kleimenov, S. Y.; Levitsky, D. I.; Chebotareva, N. A.; Golub, N. V.; Asryants, R. A.; Muronetz, V. I.; Saso, L.; Yudin, I. K.; Muranov, K. O.; Ostrovsky, M. A.; Kurganov, B. I.Biophys Chem. 2007 Feb;125(2-3):521-31. Epub 2006 Nov 21. PubMed ; doi 10.1016/j.bpc.2006.11.002
Influence of donor substrate on kinetic parameters of thiamine diphosphate binding to transketolase. Ospanov, R. V.; Kochetov, G. A.; Kurganov, B. I.Biochemistry (Mosc). 2007 Jan;72(1):84-92. PubMed
RegTransBase--a database of regulatory sequences and interactions in a wide range of prokaryotic genomes. Kazakov, A. E.; Cipriano, M. J.; Novichkov, P. S.; Minovitsky, S.; Vinogradov, D. V.; Arkin, A.; Mironov, A. A.; Gelfand, M. S.; Dubchak, I.Nucleic Acids Res. 2007 Jan;35(Database issue):D407-12. Epub 2006 Nov 16. PubMed ; doi 10.1093/nar/gkl865
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